About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28072-
Paelopatides28073LEUCOKININ RECEPTOR-RELATED
Paelopatides28074ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides28075REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides28076IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides28077LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides28078NETRIN RECEPTOR UNC5
Paelopatides28079-
Paelopatides28080-
Paelopatides28081NXPE FAMILY MEMBER
Paelopatides28082-
Paelopatides28083ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides28084ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides28085-
Paelopatides28086ENDONUCLEASE-RELATED
Paelopatides28087RETICULOCALBIN
Paelopatides28088FAM124 DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28089-
Paelopatides28090-
Paelopatides28091REVERSE TRANSCRIPTASES
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