About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28051UNCHARACTERIZED
Paelopatides28052-
Paelopatides28053WD REPEAT AND COILED-COIL-CONTAINING PROTEIN
Paelopatides28054REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides28055-
Paelopatides28056EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 10
Paelopatides28057TESTIS, PROSTATE AND PLACENTA-EXPRESSED PROTEIN
Paelopatides28058ENDONUCLEASE-RELATED
Paelopatides28059ENZYMATIC POLYPROTEIN-RELATED
Paelopatides28060ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides28061ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides28062-
Paelopatides28063-
Paelopatides28064ZGC:195170
Paelopatides28065SI:CH211-108C17.2-RELATED-RELATED
Paelopatides28066AGAP005574-PA
Paelopatides28067SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Paelopatides28068R3H DOMAIN-CONTAINING PROTEIN 4
Paelopatides28069ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides28070RETROTRANSPOSON
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