About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28112METALLOPROTEASE
Paelopatides28113L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides28114ENDONUCLEASE-RELATED
Paelopatides28115SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides28116POL PROTEIN
Paelopatides28117ENDONUCLEASE-RELATED
Paelopatides28118-
Paelopatides28119SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides28120G DOMAIN-CONTAINING PROTEIN
Paelopatides28121GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides28122-
Paelopatides28123-
Paelopatides28127SI:CH211-196P9.1-RELATED
Paelopatides28128IP13529P
Paelopatides28129-
Paelopatides28130FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides28131-
Paelopatides28132-
Paelopatides28133CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28134REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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