About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28235BUCENTAUR RELATED
Paelopatides28236UNCHARACTERIZED
Paelopatides28237-
Paelopatides28238-
Paelopatides28239SERUM RESPONSE FACTOR HOMOLOG
Paelopatides28240-
Paelopatides28241ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Paelopatides28242-
Paelopatides28243C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides28244-
Paelopatides28245CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28246-
Paelopatides28247RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D
Paelopatides28248-
Paelopatides28249SLR5058 PROTEIN
Paelopatides28251PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides28252RETROTRANSPOSON
Paelopatides28253PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides28254PROTEIN CBG26694
Paelopatides28255REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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