About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28256L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides28257PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides28258GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides28259BONUS, ISOFORM C-RELATED
Paelopatides28260ARGININE/SERINE RICH SPLICING FACTOR SF4/14
Paelopatides28267-
Paelopatides28268TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN TAB
Paelopatides28269-
Paelopatides28270-
Paelopatides28271THIOREDOXIN PEROXIDASE
Paelopatides28272-
Paelopatides28273-
Paelopatides28274ET TRANSLATION PRODUCT-RELATED
Paelopatides28275PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides28276-
Paelopatides28278-
Paelopatides28279TRANSPOSABLE ELEMENT-RELATED
Paelopatides28280-
Paelopatides28281-
Paelopatides28282TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN
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