About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28864PROTEIN CBG26694
Paelopatides28865CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28866CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28868SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides28869FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides28870FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides28871-
Paelopatides28872ENDONUCLEASE
Paelopatides28873-
Paelopatides28874FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides28875FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides28876RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides28877PROTEIN CBG26694
Paelopatides28878PROTEIN CBG26694
Paelopatides28879FORKHEAD BOX PROTEIN
Paelopatides28880SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides28881-
Paelopatides28882PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Paelopatides28883-
Paelopatides28884INTERFERON REGULATORY FACTOR
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