About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28905ENDONUCLEASE
Paelopatides28906PROTEIN CBG26694
Paelopatides28907PROTEIN CBG26694
Paelopatides28908REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides28909PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides28910L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides28911-
Paelopatides28912-
Paelopatides28913NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides28914ENDONUCLEASE-RELATED
Paelopatides28915EXPRESSED PROTEIN
Paelopatides28916-
Paelopatides28917RP42 RELATED
Paelopatides28918TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides28919TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides28921NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides28922TYROSINE-PROTEIN KINASE
Paelopatides28923CELL SURFACE GLYCOPROTEIN MUC18-RELATED
Paelopatides28924-
Paelopatides28925-
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