About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28926TYROSINE-PROTEIN KINASE
Paelopatides28927LYR MOTIF-CONTAINING PROTEIN 2
Paelopatides28928DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Paelopatides28929RNA HELICASE
Paelopatides28930-
Paelopatides28931ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Paelopatides28932PROTEIN CBG26694
Paelopatides28933ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides28934NETRIN RECEPTOR UNC5
Paelopatides28935-
Paelopatides28936RHO GTPASE-ACTIVATING PROTEIN 190
Paelopatides28937PROTEIN CBG26694
Paelopatides28938SODIUM-BILE ACID COTRANSPORTER
Paelopatides28939TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides28940REVERSE TRANSCRIPTASES
Paelopatides28941ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides28942DUF814-RELATED
Paelopatides28943-
Paelopatides28944SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'' SUBUNIT GAMMA
Paelopatides28945-
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