About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28966-
Paelopatides28967LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN
Paelopatides28968TUBULIN POLYGLUTAMYLASE
Paelopatides28969DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1
Paelopatides28970PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides28971TRANSCRIPTION INITIATION FACTOR TFIID
Paelopatides28972O-ACYLTRANSFERASE
Paelopatides28973DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
Paelopatides28974DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
Paelopatides28975-
Paelopatides28976MKRN2 OPPOSITE STRAND PROTEIN
Paelopatides28977CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28982PROTEIN CBG23806
Paelopatides28983-
Paelopatides28984-
Paelopatides28985-
Paelopatides28986PROTEIN CBG26694
Paelopatides28987FAT ATYPICAL CADHERIN-RELATED
Paelopatides28988CADHERIN-23
Paelopatides28989MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28
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