About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29215-
Paelopatides29216KETIMINE REDUCTASE MU-CRYSTALLIN
Paelopatides29217HEMOPEXIN DOMAIN-CONTAINING PROTEIN
Paelopatides29218BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides29219F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides29220-
Paelopatides29221CYTOCHROME P450 20A1
Paelopatides29222TRANSPOSON
Paelopatides29223-
Paelopatides29224ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides29225EPM2A-INTERACTING PROTEIN 1
Paelopatides29226ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides29227TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
Paelopatides29228TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
Paelopatides29229TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides29230REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29231ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides29232-
Paelopatides29233-
Paelopatides29234-
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