About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29798REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29799REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29800CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
Paelopatides29801ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides29802-
Paelopatides29803CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides29804FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides29805MRNA TURNOVER PROTEIN 4 MRTO4
Paelopatides29806ACROSIN-RELATED
Paelopatides29807CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
Paelopatides29808CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
Paelopatides29809RETINOL DEHYDROGENASE
Paelopatides29810-
Paelopatides29811-
Paelopatides29812-
Paelopatides29813-
Paelopatides29814MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides29815RETROTRANSPOSON
Paelopatides29816-
Paelopatides29817-
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