About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29861-
Paelopatides29862REVERSE TRANSCRIPTASES
Paelopatides29863-
Paelopatides29864SCAVENGER RECEPTOR CLASS F
Paelopatides29865SCAVENGER RECEPTOR CLASS F
Paelopatides29866METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides29867METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides29868-
Paelopatides29869GLUTAMATE CYSTEINE LIGASE
Paelopatides29870GLUTAMATE CYSTEINE LIGASE
Paelopatides29871-
Paelopatides29872PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides29873FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides29874F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
Paelopatides29875COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
Paelopatides29876ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides29877-
Paelopatides29878-
Paelopatides29879POL PROTEIN
Paelopatides29880-
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