About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29735STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN
Paelopatides29736RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Paelopatides29737NYD-SP28 PROTEIN
Paelopatides29738-
Paelopatides29739-
Paelopatides29743-
Paelopatides29744SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides29745SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides29746-
Paelopatides29747CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides29748-
Paelopatides29749-
Paelopatides29750ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides29751PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4
Paelopatides29752HEAT SHOCK PROTEIN 90 FAMILY MEMBER
Paelopatides29753APOPTOTIC PROTEASE-ACTIVATING FACTOR 1
Paelopatides29754TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides29755REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29756PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides29757PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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