About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29694E3 UBIQUITIN-PROTEIN LIGASE COP1
Paelopatides29695-
Paelopatides29696-
Paelopatides29697-
Paelopatides29698ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides29699-
Paelopatides29700PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides29701FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides29702WD40 REPEAT PROTEIN 4
Paelopatides29703MONOCARBOXYLATE TRANSPORTER
Paelopatides29704PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides29705-
Paelopatides29706CALBINDIN
Paelopatides29707REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29708-
Paelopatides29709MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
Paelopatides29710TRANSLATION ELONGATION FACTOR-RELATED
Paelopatides29711TRANSLATION ELONGATION FACTOR-RELATED
Paelopatides29712EG:EG0003.4 PROTEIN-RELATED
Paelopatides29713CARBOHYDRATE SULFOTRANSFERASE
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