About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30632METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN
Paelopatides30633PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides30634-
Paelopatides30635-
Paelopatides30636INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Paelopatides30637ACETYL-COA C-ACYLTRANSFERASE
Paelopatides306385-HYDROXYTRYPTAMINE RECEPTOR
Paelopatides30639-
Paelopatides30640REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30641-
Paelopatides30642RETROTRANSPOSON
Paelopatides30643IDURONATE 2-SULFATASE
Paelopatides30644-
Paelopatides30645-
Paelopatides30646-
Paelopatides30648ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides30649B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides30650EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED
Paelopatides30651HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides30652PROTEIN CBG26694
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