About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30653HEDGEHOG
Paelopatides30654TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides30655-
Paelopatides30656TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides30657METAL DEPENDENT HYDROLASE - RELATED
Paelopatides30658METAL DEPENDENT HYDROLASE - RELATED
Paelopatides30659SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED
Paelopatides30662HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides30663HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides30664ENDONUCLEASE-RELATED
Paelopatides30665POL PROTEIN
Paelopatides30666TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides30667-
Paelopatides30668PROTEIN CBG26694
Paelopatides30669SLR5058 PROTEIN
Paelopatides30670-
Paelopatides30671REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30672NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides30673-
Paelopatides30674TMEM26 PROTEIN
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