About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31212FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31213-
Paelopatides31214REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31219PROTEIN CBG26694
Paelopatides31220UNCHARACTERIZED
Paelopatides31222MULTICOPPER OXIDASE-RELATED
Paelopatides31223RETROTRANSPOSON
Paelopatides31224-
Paelopatides31225-
Paelopatides31226PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides31227RETROTRANSPOSON
Paelopatides31228-
Paelopatides31229REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31230GLUTATHIONE S-TRANSFERASE
Paelopatides31231TUBULIN POLYGLUTAMYLASE COMPLEX SUBUNIT 1
Paelopatides31232-
Paelopatides31233CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides31234REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31235DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides31236-
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