About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31257PROTEIN CBG26694
Paelopatides31258-
Paelopatides31259MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13
Paelopatides31260MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13
Paelopatides31261REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31262PROTEIN CBG26694
Paelopatides31263-
Paelopatides31264ZGC:195170
Paelopatides31265LEUCINE DEHYDROGENASE
Paelopatides31266-
Paelopatides31267-
Paelopatides31268-
Paelopatides31269-
Paelopatides31270F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31271-
Paelopatides31272CARDIOLIPIN HYDROLASE
Paelopatides31273-
Paelopatides31274-
Paelopatides31275METHIONINE--TRNA LIGASE
Paelopatides31276THAP DOMAIN PROTEIN
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