About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31149ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides31150ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides31151REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31152-
Paelopatides31153ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31154L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides31155-
Paelopatides31156SPHINGOSINE KINASE
Paelopatides31157REGULATOR OF CHROMOSOME CONDENSATION
Paelopatides31158REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31159METHYLTRANSFERASE-LIKE PROTEIN 24
Paelopatides31160ODD-SKIPPED - RELATED
Paelopatides31161PROTEIN CBG26694
Paelopatides31162PROTEIN CBG26694
Paelopatides31163MUCOLIPIN
Paelopatides31164GUANINE NUCLEOTIDE EXCHANGE C9ORF72
Paelopatides31165PBS LYASE HEAT-LIKE PROTEIN
Paelopatides311681-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED
Paelopatides31169PYRROLINE-5-CARBOXYLATE REDUCTASE
Paelopatides31170CXC DOMAIN-CONTAINING PROTEIN-RELATED
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