About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31171-
Paelopatides31172CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31173EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides31174CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides31175MITOCHONDRIAL RIBOSOMAL PROTEIN S18B
Paelopatides31176SERINE/THREONINE-PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10-RELATED
Paelopatides31177-
Paelopatides31178-
Paelopatides31179LIM/HOMEOBOX PROTEIN LHX
Paelopatides31180-
Paelopatides31181CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31182CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31183CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides31184FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31185-
Paelopatides31186HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31187-
Paelopatides31188REVERSE TRANSCRIPTASES
Paelopatides31189PROTEIN CBG26694
Paelopatides31190-
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