About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31107-
Paelopatides31108-
Paelopatides31109RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN
Paelopatides31110-
Paelopatides31111-
Paelopatides31112-
Paelopatides31113-
Paelopatides31114-
Paelopatides31115SUGAR TRANSPORTER
Paelopatides31116NETRIN RECEPTOR UNC5
Paelopatides31117ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides31118ASPARTYL AMINOPEPTIDASE
Paelopatides31119-
Paelopatides31120LEUCOKININ RECEPTOR-RELATED
Paelopatides31122ATP-DEPENDENT DNA HELICASE
Paelopatides3112352 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides31124-
Paelopatides31125REVERSE TRANSCRIPTASES
Paelopatides31126BCL-2 RELATED
Paelopatides31127N-ALPHA-ACETYLTRANSFERASE
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