About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31383PROTEIN CBG26694
Paelopatides31384HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31385-
Paelopatides31386ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides31387REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31388-
Paelopatides31389HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31390NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides31394UNCHARACTERIZED
Paelopatides31395UBIQUITIN FUSION DEGRADATON PROTEIN 1
Paelopatides31396REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31397RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides31398THIOPURINE S-METHYLTRANSFERASE
Paelopatides31399INNER CENTROMERE PROTEIN
Paelopatides31400-
Paelopatides31401MULTICOPPER OXIDASE-RELATED
Paelopatides31402-
Paelopatides31403POL PROTEIN
Paelopatides31404ENDONUCLEASE-RELATED
Paelopatides31405TRANSPOSABLE ELEMENT-RELATED
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