About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31449CUB DOMAIN-CONTAINING PROTEIN
Paelopatides31450ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31451ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31452LD44762P
Paelopatides31453REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31454ANKYRIN REPEAT FAMILY PROTEIN
Paelopatides31455WD40 PROTEIN CIAO1
Paelopatides31456-
Paelopatides31457-
Paelopatides31458ZINC FINGER PROTEIN 593
Paelopatides31459-
Paelopatides31460PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
Paelopatides31461ENDONUCLEASE-RELATED
Paelopatides31462BARDET-BIEDL SYNDROME 12 PROTEIN
Paelopatides31463BARDET-BIEDL SYNDROME 12 PROTEIN
Paelopatides31464TETRATRICOPEPTIDE REPEAT PROTEIN 19
Paelopatides31465REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31466BUCENTAUR RELATED
Paelopatides31467RETROTRANSPOSON
Paelopatides31468-
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