About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31343-
Paelopatides31344NETRIN RECEPTOR UNC5
Paelopatides31345ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides31346INTEGRIN ALPHA
Paelopatides31347INTEGRIN ALPHA
Paelopatides31348N-ACETYLGALACTOSAMINYLTRANSFERASE
Paelopatides31349EPM2A-INTERACTING PROTEIN 1
Paelopatides31350HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides31351SEPTIN
Paelopatides31352PROTEIN CBG26694
Paelopatides31353FUMARATE HYDRATASE-RELATED
Paelopatides31354-
Paelopatides31355IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides31356IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides31357RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN
Paelopatides31358PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
Paelopatides31359ANION EXCHANGE PROTEIN
Paelopatides31360-
Paelopatides31361-
Paelopatides31362-
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