About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31297CHLORIDE CHANNEL PROTEIN 2
Paelopatides31298ATP-BINDING CASSETTE SUB-FAMILY B
Paelopatides31299-
Paelopatides31303DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides31304PROTEIN CBG26694
Paelopatides31305PROTEIN CBG26694
Paelopatides31306ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31307-
Paelopatides31308-
Paelopatides31309L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides31310DNA POLYMERASE EPSILON SUBUNIT 3
Paelopatides31312RAP GTPASE-ACTIVATING PROTEIN
Paelopatides31313PROTEIN CBG26694
Paelopatides31314-
Paelopatides31315MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
Paelopatides31316L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides31317UNCHARACTERIZED
Paelopatides31318-
Paelopatides31319POL PROTEIN
Paelopatides31320AGAP011099-PA
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