About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31321RETROTRANSPOSON
Paelopatides31322FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31323PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides31324-
Paelopatides31325-
Paelopatides31326RETROTRANSPOSON
Paelopatides31327PROGRAMMED CELL DEATH 4
Paelopatides31328PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides31329HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides31330IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Paelopatides31333-
Paelopatides31334FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145
Paelopatides31335CCR4-NOT TRANSCRIPTION COMPLEX RELATED
Paelopatides31336-
Paelopatides31337-
Paelopatides31338-
Paelopatides31339RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides31340-
Paelopatides31341NG5
Paelopatides31342-
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