About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31677SODIUM-BILE ACID COTRANSPORTER
Paelopatides31678-
Paelopatides3167952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides31680-
Paelopatides31681-
Paelopatides31682-
Paelopatides31683ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31684NETRIN RECEPTOR UNC5
Paelopatides31689RETROTRANSPOSON
Paelopatides31690RETROTRANSPOSON
Paelopatides31691ZINC FINGER PROTEIN
Paelopatides31692PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides31693-
Paelopatides31694F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31695MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides31696ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31697PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides31698-
Paelopatides31699-
Paelopatides31700-
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