About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31701ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides31702CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11-RELATED
Paelopatides31703OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN
Paelopatides31704CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31705FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31706FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31707FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31708-
Paelopatides31709UBIQUITIN
Paelopatides31711EPM2A-INTERACTING PROTEIN 1
Paelopatides31713PROTEIN CBG26694
Paelopatides31714REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31715LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides31716-
Paelopatides31717-
Paelopatides31718IFT140/172-RELATED
Paelopatides31719FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31720CADHERIN DOMAIN-CONTAINING PROTEIN
Paelopatides31721AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides31722-
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