About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31595PROTEIN CBG23806
Paelopatides31596PROTEIN CBG26694
Paelopatides31597PCD6 INTERACTING PROTEIN-RELATED
Paelopatides31598PCD6 INTERACTING PROTEIN-RELATED
Paelopatides31599-
Paelopatides31600LD30288P
Paelopatides31601DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides31602REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31603ANTITOXIN VAPB1
Paelopatides31604CS DOMAIN-CONTAINING PROTEIN
Paelopatides31605-
Paelopatides31606BUCENTAUR RELATED
Paelopatides31607POL PROTEIN
Paelopatides31608ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31609ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31610ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31611-
Paelopatides31612REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31613MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides31614-
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