About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31635-
Paelopatides31636-
Paelopatides31637FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31638PROTEIN CBG26694
Paelopatides31639INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides31640PROTEIN CBG26694
Paelopatides31641PROTEIN CBG26694
Paelopatides31642PROTEIN CBG26694
Paelopatides31643-
Paelopatides31644-
Paelopatides31645-
Paelopatides31646E3 UBIQUITIN-PROTEIN LIGASE MIB2
Paelopatides31647GTP-BINDING
Paelopatides31648-
Paelopatides31649PROTEIN CBG26694
Paelopatides31650INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides31651RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides31652PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides31653DYNEIN REGULATORY COMPLEX SUBUNIT 4
Paelopatides31654HEAT SHOCK TRANSCRIPTION FACTOR
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