About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31615TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides31616TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides31617PROTEIN CBG26694
Paelopatides31618ENDONUCLEASE-RELATED
Paelopatides31619BONUS, ISOFORM C-RELATED
Paelopatides31620-
Paelopatides31621FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31622FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31623FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31624FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides31625MYOTROPHIN
Paelopatides31626MYOTROPHIN
Paelopatides31627-
Paelopatides31628-
Paelopatides31629DNA2/NAM7 HELICASE FAMILY MEMBER
Paelopatides31630TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides31631-
Paelopatides31632REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31633-
Paelopatides31634-
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