About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31829FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31830FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31831ACROSIN-RELATED
Paelopatides31832PROTEIN CBG26694
Paelopatides31833HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides31834GTP-BINDING
Paelopatides31835-
Paelopatides31836-
Paelopatides31837REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31838-
Paelopatides31839PROTEIN CBG26694
Paelopatides31840OPSIN
Paelopatides31841F-BOX ONLY PROTEIN 47
Paelopatides31842REVERSE TRANSCRIPTASES
Paelopatides31843COILED-COIL DOMAIN-CONTAINING PROTEIN 153
Paelopatides3184415-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Paelopatides31845PROTEIN CBG26694
Paelopatides31846-
Paelopatides31848TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides31849CONTACTIN 5
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