About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31765CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31766DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides31767DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides31768-
Paelopatides31769EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides31770EXPRESSED PROTEIN
Paelopatides31771UNCHARACTERIZED
Paelopatides31772-
Paelopatides31775-
Paelopatides31776MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides31777L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides31778MULTICOPPER OXIDASE-RELATED
Paelopatides31779DNA2/NAM7 HELICASE FAMILY
Paelopatides31780-
Paelopatides31781-
Paelopatides31783-
Paelopatides31784INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31785N-ALPHA-ACETYLTRANSFERASE 40
Paelopatides31786FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31787TYROSINE-PROTEIN KINASE
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