About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32244-
Paelopatides32245ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
Paelopatides32246-
Paelopatides32247-
Paelopatides32248KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Paelopatides32249RAS-LIKE FAMILY MEMBER 11
Paelopatides32250ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides32251G-PROTEIN COUPLED RECEPTOR
Paelopatides32252PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides32253ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
Paelopatides32254CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides32255PROTEIN CBG26694
Paelopatides32256-
Paelopatides32257PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides32258-
Paelopatides32259NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED
Paelopatides32260-
Paelopatides32261PROTEIN CBG21859
Paelopatides32262SERINE/THREONINE-PROTEIN KINASE
Paelopatides32263-
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