About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32202REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides32203WSCD FAMILY MEMBER CG9164
Paelopatides32204HISTIDINE-RICH GLYCOPROTEIN
Paelopatides32205HISTIDINE-RICH GLYCOPROTEIN
Paelopatides32206-
Paelopatides322072,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
Paelopatides32208EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides32209MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
Paelopatides32210NUCLEOREDOXIN
Paelopatides32211UNCHARACTERIZED
Paelopatides32212ALPHA-TECTORIN-RELATED
Paelopatides32213COILED-COIL DOMAIN-CONTAINING PROTEIN 190
Paelopatides32214XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Paelopatides32215F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32216PROTEIN CBG26694
Paelopatides32218POL PROTEIN
Paelopatides32219ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides32220ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides32221PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides32222ACYL-MALONYL CONDENSING ENZYME-RELATED
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