About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides322854.1 G PROTEIN
Paelopatides32286NUCLEAR TRANSPORT FACTOR 2
Paelopatides32287N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
Paelopatides32288ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides32289RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
Paelopatides32290HEME-BINDING PROTEIN-RELATED
Paelopatides32291UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE
Paelopatides32292UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE
Paelopatides32293MEDIATOR COMPLEX SUBUNIT
Paelopatides32294MEDIATOR COMPLEX SUBUNIT
Paelopatides32295TETRASPANIN
Paelopatides32296REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides32297BUCENTAUR RELATED
Paelopatides32298ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides32300-
Paelopatides32301-
Paelopatides32302ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides32303PROTEIN CBG26694
Paelopatides32304ENZYMATIC POLYPROTEIN-RELATED
Paelopatides32305-
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