About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32694PROTEIN CBG26694
Paelopatides32695ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides32696ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides32697ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides3269830S RIBOSOMAL PROTEIN S10 FAMILY MEMBER
Paelopatides32699BUCENTAUR RELATED
Paelopatides32700-
Paelopatides32701-
Paelopatides32702-
Paelopatides32703-
Paelopatides32704PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32705EPM2A-INTERACTING PROTEIN 1
Paelopatides32706PROTEIN CBG26694
Paelopatides32707ENDONUCLEASE-RELATED
Paelopatides32708ENZYMATIC POLYPROTEIN-RELATED
Paelopatides32709TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides32710PARANEOPLASTIC ANTIGEN
Paelopatides32711RYBP AND YAF2-RELATED
Paelopatides32712-
Paelopatides32713UNCHARACTERIZED
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