About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32650F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32651RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides32652ENDONUCLEASE
Paelopatides32653-
Paelopatides32654NOTCH LIGAND FAMILY MEMBER
Paelopatides32655POL PROTEIN
Paelopatides32656ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides32657L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides32658-
Paelopatides32662-
Paelopatides32663TRANSPOSON
Paelopatides32664TRANSPOSON
Paelopatides32665-
Paelopatides32666-
Paelopatides32667TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides32668ENDONUCLEASE-RELATED
Paelopatides32669REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides32670BONUS, ISOFORM C-RELATED
Paelopatides32671-
Paelopatides32672PROTEIN CBG26694
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