About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32794ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides32795TRANSPOSON
Paelopatides32796-
Paelopatides32797-
Paelopatides32798-
Paelopatides32799-
Paelopatides32800TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
Paelopatides32801PROTEIN CBG26694
Paelopatides32802ENZYMATIC POLYPROTEIN-RELATED
Paelopatides32803TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides32804LIM DOMAIN-CONTAINING PROTEIN
Paelopatides32805-
Paelopatides32806-
Paelopatides32807CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32808DNA HELICASE RECQ FAMILY MEMBER
Paelopatides32809-
Paelopatides32810PROTEIN CBG26694
Paelopatides32811-
Paelopatides32812F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32813PROTEIN CBG26694
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