About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32856ARYLSULFATASE
Paelopatides32857IMPORTIN-7, 8, 11
Paelopatides32858S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides32860CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Paelopatides32861-
Paelopatides32862DUAL SPECIFICITY PROTEIN KINASE
Paelopatides32863-
Paelopatides32864GTP-BINDING
Paelopatides32865GTP-BINDING
Paelopatides32866GTP-BINDING
Paelopatides32867SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32868ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides32869SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32870SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32871ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides32872GAG-RELATED PROTEIN
Paelopatides32873F-BOX/WD REPEAT-CONTAINING PROTEIN 2
Paelopatides32874GLYCOSYLTRANSFERASE
Paelopatides32875-
Paelopatides32876HOMEOBOX PROTEIN
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