About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32897-
Paelopatides32898CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32899CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32900CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32901CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32902ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides32904MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Paelopatides32905MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Paelopatides32906L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides32907-
Paelopatides32908REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides32909-
Paelopatides32910-
Paelopatides32911PHD FINGER PROTEIN 20-RELATED
Paelopatides32912PHD FINGER PROTEIN 20-RELATED
Paelopatides32913-
Paelopatides32914-
Paelopatides32915-
Paelopatides32916PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides32917EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN
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