About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34345-
Paelopatides34346CASEIN KINASE-RELATED
Paelopatides34347PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides34348-
Paelopatides34349SH2 DOMAIN CONTAINING PROTEIN
Paelopatides34350UNCHARACTERIZED
Paelopatides34351REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34352-
Paelopatides34353UNCHARACTERIZED
Paelopatides34356REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34357-
Paelopatides34358SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
Paelopatides34359SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
Paelopatides34360DELTA(14)-STEROL REDUCTASE
Paelopatides34361DELTA(14)-STEROL REDUCTASE
Paelopatides34363-
Paelopatides34364CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides34365-
Paelopatides34366-
Paelopatides34367CAT EYE SYNDROME CRITICAL REGION PROTEIN 6
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