About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34245NEGATIVE ELONGATION FACTOR D
Paelopatides34246NEGATIVE ELONGATION FACTOR D
Paelopatides34247TEASHIRT-RELATED
Paelopatides34248-
Paelopatides34249REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34250ZINC FINGER PROTEIN
Paelopatides34251ZINC FINGER PROTEIN
Paelopatides34252-
Paelopatides34253SOLUTE CARRIER FAMILY 52
Paelopatides34254REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34255-
Paelopatides34256REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34257CASPASE
Paelopatides34258-
Paelopatides34259-
Paelopatides34260-
Paelopatides34261-
Paelopatides34262-
Paelopatides34263ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides34264PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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