About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34222VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
Paelopatides34223PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides34224REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34225DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides34226VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
Paelopatides34227ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Paelopatides34228ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Paelopatides34232-
Paelopatides34233PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides34234PROTOPORPHYRINOGEN OXIDASE
Paelopatides34235EXOSOME COMPLEX COMPONENT
Paelopatides34236FI04643P-RELATED
Paelopatides34237BONUS, ISOFORM C-RELATED
Paelopatides34238E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
Paelopatides34239UNCHARACTERIZED
Paelopatides34240SUGAR NUCLEOTIDE EPIMERASE RELATED
Paelopatides34241-
Paelopatides34242SUGAR NUCLEOTIDE EPIMERASE RELATED
Paelopatides34243PROPERDIN
Paelopatides34244SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N
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