About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34368-
Paelopatides34369-
Paelopatides34370-
Paelopatides34371CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE
Paelopatides34372-
Paelopatides34373COILED-COIL DOMAIN-CONTAINING PROTEIN 51
Paelopatides34374UDP/ADP-SUGAR PYROPHOSPHATASE
Paelopatides34375-
Paelopatides34376RIBULOKINASE
Paelopatides34377TRIMERIC INTRACELLULAR CATION CHANNEL
Paelopatides34378OXIDOREDUCTASE-RELATED
Paelopatides34379RETINOL DEHYDROGENASE-RELATED
Paelopatides34380REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34381ENZYMATIC POLYPROTEIN-RELATED
Paelopatides34382PROTEIN CBG26694
Paelopatides34383E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED
Paelopatides34384PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides34385-
Paelopatides34386ATAXIN 2-RELATED
Paelopatides34387PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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