About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34305ENDONUCLEASE-RELATED
Paelopatides34306G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN
Paelopatides34307ACROSIN-RELATED
Paelopatides34308ACROSIN-RELATED
Paelopatides34309COMPLEMENT FACTOR H-RELATED
Paelopatides34310N4BP1-RELATED
Paelopatides34311UNCHARACTERIZED
Paelopatides34312OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides34313-
Paelopatides34314RIBOSOMAL PROTEIN S9
Paelopatides34315-
Paelopatides34316PROTEIN CBG26694
Paelopatides34317-
Paelopatides34318MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED
Paelopatides34319LEUCINE ZIPPER PROTEIN 4-RELATED
Paelopatides34320YCCV-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides34321NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING
Paelopatides34322UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides34323-
Paelopatides34324TUBULIN
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