About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34430DIACYLGLYCEROL O-ACYLTRANSFERASE
Paelopatides34431-
Paelopatides34432-
Paelopatides34433RETROTRANSPOSON
Paelopatides34434RETROTRANSPOSON
Paelopatides34435RETROTRANSPOSON
Paelopatides34436-
Paelopatides34437-
Paelopatides34438AUGMIN SUBUNIT 4 FAMILY MEMBER
Paelopatides34439REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34440EXODEOXYRIBONUCLEASE III
Paelopatides34441UBIQUITIN-ACTIVATING ENZYME E1
Paelopatides34442TRANSIENT RECEPTOR POTENTIAL CHANNEL 4-ASSOCIATED PROTEIN TCPC4AP
Paelopatides34443PHOSPHATIDYLINOSITOL GLYCAN
Paelopatides34444INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides34445-
Paelopatides34446TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides34447HELICASE WITH DEATH DOMAIN-RELATED
Paelopatides34448GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
Paelopatides34449-
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