About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35012EXPORTIN 4,7-RELATED
Paelopatides35013-
Paelopatides35014T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides35015TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides35016PROTEIN CBG26694
Paelopatides35017ENDONUCLEASE-RELATED
Paelopatides35018SUGAR KINASE
Paelopatides35019N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED
Paelopatides35020BTK-BINDING PROTEIN-RELATED
Paelopatides35022PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides35023SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
Paelopatides35024BTK-BINDING PROTEIN-RELATED
Paelopatides35025FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides35026-
Paelopatides35027-
Paelopatides35028STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Paelopatides35029CYTOCHROME P450 FAMILY 1
Paelopatides35030STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Paelopatides35031TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides35032-
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