About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34909INTEGRIN ALPHA
Paelopatides34910INTEGRIN ALPHA
Paelopatides34911SENTRIN/SUMO-SPECIFIC PROTEASE
Paelopatides34912SERINE/THREONINE-PROTEIN KINASE NEK
Paelopatides34913METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
Paelopatides34914ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides34915METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
Paelopatides34916-
Paelopatides34917PROTEIN CBG26694
Paelopatides34918L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides34919PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides34920GRANULIN
Paelopatides34923-
Paelopatides34924-
Paelopatides34925PHOSPHOLIPID ACYLTRANSFERASE
Paelopatides34926LYMPHOID-SPECIFIC HELICASE
Paelopatides34927METALLOPROTEASE INHIBITOR
Paelopatides34928PROTEIN KINASE C, MU
Paelopatides34929SERINE/THREONINE-PROTEIN KINASE
Paelopatides34930UPSET, ISOFORM A
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