About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35033FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220)
Paelopatides35034-
Paelopatides35035-
Paelopatides35036ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides35037UNCHARACTERIZED
Paelopatides35038-
Paelopatides35039HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides35040ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE
Paelopatides35041DEADENYLATION COMPLEX SUBUNIT PAN3
Paelopatides35042BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
Paelopatides35043-
Paelopatides35044-
Paelopatides35045NETRIN/LAMININ-RELATED
Paelopatides35046DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49
Paelopatides35047CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides35048CADHERIN-23
Paelopatides35049CADHERIN-23
Paelopatides35050TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides35051PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides35052PLATELET-DERIVED GROWTH FACTOR RECEPTOR LIKE
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